edQTL

To identify genetic variants that could explain the variability of RNA editing level, we ran association tests between editing levels and genotypes for all variants genome-wide at selected editing sites. In order to focus on cis-effects, we limited our analysis to RNA editing QTL (edQTL) within 200 kb of the RNA editing site.
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Chromsome Position edQTL(chrom:pos:ref:alt) BETA P-value
13 28207006 13:28206421:T:C 0.2638 2.71e-08
13 28207006 13:28206695:T:G 0.2908 5.904e-09
13 28207006 13:28207064:T:A 0.3152 1.259e-10
13 28207006 13:28207076:T:C 0.3244 3.309e-11
13 28207006 13:28207082:G:A 0.5108 2.103e-07
13 28207006 13:28207931:A:C 0.2753 6.359e-08
13 28207006 13:28208153:G:A 0.3191 3.621e-09
13 28207006 13:28208354:T:C 0.315 6.283e-11
13 28207006 13:28208918:C:T 0.2666 2.503e-08
13 28208261 13:28206419:C:C -0.7781 2.105e-08
13 28208261 13:28206695:T:G 0.9085 4.528e-10
13 28208261 13:28207064:T:A 0.8885 7.467e-10
13 28208261 13:28207076:T:C 0.8526 4.148e-09
13 28208261 13:28207448:A:G 0.8563 1.925e-08
13 28208261 13:28207453:C:T 0.8447 2.27e-08
13 28208261 13:28207931:A:C 0.9314 2.717e-10
13 28208261 13:28208153:G:A 0.8503 1.045e-07
13 28208261 13:28208354:T:C 0.895 2.784e-10
13 28208316 13:27959717:C:T 1.161 6.058e-08
13 28208316 13:27959759:C:T 1.105 2.588e-07
13 28208316 13:27959811:A:G 1.401 5.126e-16
13 28208316 13:27960056:C:T 1.011 6.586e-09
13 28208316 13:28045486:C:G 1.309 6.924e-09
13 28208316 13:28045528:C:A 0.9369 2.878e-09
13 28208316 13:28048463:C:G 1.309 6.924e-09
13 28208316 13:28176565:T:G 1.59 1.29e-10
13 28208316 13:28176568:C:G 1.505 3.945e-08
13 28208316 13:28194171:C:A 1.205 3.151e-15
13 28208316 13:28202240:T:C 0.8106 3.869e-08
13 28208316 13:28206419:C:C -1.286 2.913e-20
13 28208316 13:28206421:T:C 1.265 1.927e-19
13 28208316 13:28206695:T:G 1.122 2.153e-13
13 28208316 13:28207064:T:A 1.343 3.67e-20
13 28208316 13:28207076:T:C 1.39 9.407e-22
13 28208316 13:28207082:G:A 1.731 1.605e-08
13 28208316 13:28207099:G:A 1.426 2.465e-18
13 28208316 13:28207448:A:G 1.087 1.073e-11
13 28208316 13:28207453:C:T 1.12 1.27e-12
13 28208316 13:28207931:A:C 1.253 2.084e-16
13 28208316 13:28208153:G:A 1.239 6.377e-14
13 28208316 13:28208354:T:C 1.348 4.857e-21
13 28208316 13:28208804:C:T 0.8212 2.472e-07
13 28208316 13:28229034:T:C 0.9468 9.266e-12
13 28208316 13:28229061:T:C 0.9584 3.157e-12
13 28208320 13:28206419:C:C 0.4202 2.439e-10
13 28208320 13:28206421:T:C -0.3913 5.114e-09
13 28208320 13:28206695:T:G -0.4862 2.751e-12
13 28208320 13:28207064:T:A -0.4191 1.96e-09
13 28208320 13:28207076:T:C -0.4155 2.913e-09
13 28208320 13:28207099:G:A -0.4524 5.292e-09
13 28208320 13:28207448:A:G -0.5114 1.22e-12
13 28208320 13:28207453:C:T -0.5014 2.256e-12
13 28208320 13:28207931:A:C -0.4859 5.926e-12
13 28208320 13:28208153:G:A -0.5073 2.079e-11
13 28208320 13:28208354:T:C -0.3961 9.637e-09
13 28208320 13:28229034:T:C -0.364 1.194e-08
13 28208320 13:28229061:T:C -0.3642 8.818e-09
13 28208321 13:28206419:C:C 0.4368 8.208e-09
13 28208321 13:28206695:T:G -0.4939 5.835e-10
13 28208321 13:28207448:A:G -0.5229 2.336e-10
13 28208321 13:28207453:C:T -0.5048 7.4e-10
13 28208321 13:28207931:A:C -0.477 4.176e-09
13 28208321 13:28208153:G:A -0.5161 2.614e-09
13 28208321 13:28229034:T:C -0.4071 1.868e-08
13 28208321 13:28229061:T:C -0.4137 7.892e-09
13 28208353 13:28206695:T:G 0.4297 5.009e-09
13 28208353 13:28207064:T:A 0.424 5.534e-09
13 28208353 13:28207076:T:C 0.4683 8.445e-11
13 28208353 13:28207931:A:C 0.4347 5.359e-09
13 28208353 13:28208354:T:C 0.4979 1.43e-12
13 28208375 13:28206419:C:C 0.2623 1.169e-09
13 28208375 13:28206421:T:C -0.226 2.334e-07
13 28208375 13:28206695:T:G -0.3028 2.132e-11
13 28208375 13:28207064:T:A -0.2815 4.073e-10
13 28208375 13:28207076:T:C -0.2842 2.799e-10
13 28208375 13:28207099:G:A -0.2837 1.677e-08
13 28208375 13:28207448:A:G -0.291 7.47e-10
13 28208375 13:28207453:C:T -0.2871 9.04e-10
13 28208375 13:28207931:A:C -0.2883 4.078e-10
13 28208375 13:28208153:G:A -0.3016 1.041e-09
13 28208375 13:28208354:T:C -0.2921 3.515e-11
13 28208375 13:28208415:G:A -0.3807 6.25e-08
13 28208375 13:28229034:T:C -0.2197 1.226e-07
13 28208375 13:28229061:T:C -0.2184 1.158e-07
14 7567288 14:7566870:A:G 0.3691 5.749e-09
14 7567288 14:7566892:G:A 0.3662 6.981e-09
14 7567288 14:7566913:T:C 0.4044 1.789e-09
14 7567288 14:7566914:G:A 0.3996 2.879e-09
14 7567288 14:7704580:C:T 0.5183 5.342e-08
15 104833460 15:104833944:C:G 0.3805 1.753e-07
15 104834538 15:104535111:G:A -0.3507 1.478e-09
15 104834538 15:104541659:G:C -0.3312 3.271e-09
15 104834538 15:104541867:C:T -0.3434 1.602e-09
15 104834538 15:104542218:T:G -0.3967 1.687e-07
15 104834538 15:104542394:G:C -0.4048 1.125e-08
15 104834538 15:104543058:C:T -0.3434 7.39e-09
15 104834538 15:104543472:C:T -0.3402 2.33e-09
15 104834538 15:104543999:G:A -0.3618 1.076e-08
15 104834538 15:104544989:C:T -0.3409 9.123e-09
15 104834538 15:104583990:A:G -0.3374 7.708e-08
15 104834538 15:104584045:T:C -0.3591 2.109e-09
15 104834538 15:104598007:C:T -0.3225 4.418e-09
15 104834538 15:104605699:T:C -0.3212 3.718e-09
15 104834538 15:104605901:T:C -0.3217 6.729e-09
15 104834538 15:104606112:G:T -0.324 3.809e-09
15 104834538 15:104606235:A:G -0.3336 4.679e-09
15 104834538 15:104613986:T:C -0.3374 1.398e-08
15 104834538 15:104614238:T:C -0.3638 1.612e-07
15 104834538 15:104617518:T:C -0.3174 2.491e-08
15 104834538 15:104667098:G:A -0.3682 1.451e-07
15 104834538 15:104827186:C:T -0.4529 1.715e-07
15 104834538 15:104830818:G:A -0.3381 1.433e-09
15 104834538 15:104831906:T:G -0.3188 2.046e-08
15 104834538 15:104832697:A:T -0.3394 1.427e-08
15 104834538 15:104832938:A:G -0.3307 4.052e-09
15 104834538 15:104834562:G:T -0.3373 4.715e-09
15 104834538 15:104835510:C:G -0.3697 6.091e-10
15 104834538 15:104895446:G:T -0.3537 2.407e-07
15 104834538 15:104925775:G:A -0.3737 4.496e-08
15 104834538 15:104938018:T:C -0.3162 2.921e-08
15 104834538 15:104944628:A:G -0.3355 4.672e-09
15 104834538 15:104947723:T:C -0.3766 3.482e-08
15 104834588 15:104544989:C:T -0.3581 4.428e-08
15 104834588 15:104894664:T:G -0.3927 1.337e-07
15 104834588 15:104894666:G:A -0.3927 1.337e-07
15 104834588 15:104894667:A:G -0.3927 1.337e-07
15 104834588 15:104895446:G:T -0.3881 2.513e-07
15 75976489 15:75868165:A:A -0.4093 1.29e-08
15 75976489 15:75990360:C:T 0.7006 1.989e-07
15 75976489 15:76031916:T:C 0.4195 5.034e-08
15 75976489 15:76099505:G:A 0.4156 2.031e-07
11 25479366 11:25479114:A:G 0.3458 7.157e-08
11 25479366 11:25479158:T:G 0.3458 7.157e-08
16 23629311 16:23635220:C:T 0.3116 5.219e-08
16 23629314 16:23635220:C:T 0.7395 2.315e-09
16 23629324 16:23635220:C:T 0.5649 1.096e-08
16 23629584 16:23635220:C:T 0.3811 5.476e-09
16 26512535 16:26513657:C:T 0.3973 2.194e-08
16 26512535 16:26513796:A:G 0.3765 1.12e-07
16 26512535 16:26514646:C:T 0.3919 7.773e-08
16 26512555 16:26512800:T:G 0.914 4.071e-09
16 26512555 16:26513450:C:T 0.9021 3.419e-09
16 26512555 16:26514443:T:C 0.9905 9.471e-11
16 26513871 16:26513657:C:T 0.3357 2.195e-09
16 26513871 16:26513712:G:A 0.6621 3.989e-09
16 26513871 16:26513781:A:G 0.2946 5.97e-08
16 26513871 16:26513796:A:G 0.3401 1.068e-09
16 26513871 16:26514625:A:G 0.3012 6.575e-08
16 26513871 16:26514646:C:T 0.3413 2.952e-09
2 30295837 2:30295308:G:G -0.3641 1.735e-10
2 30295839 2:30295308:G:G -0.5157 1.626e-12
2 68657199 2:68916607:T:C 0.2029 1.132e-08
2 68657204 2:68894443:T:C 0.3442 5.251e-10
2 68657204 2:68916607:T:C 0.4611 1.599e-12
2 68657209 2:68387630:C:G 0.8552 1.475e-07
2 68657209 2:68894443:T:C 0.3809 1.165e-09
2 68657209 2:68916607:T:C 0.4072 6.589e-08
2 68657281 2:68916607:T:C 0.2557 4.293e-10
2 68657335 2:68916607:T:C 0.1953 3.581e-10
2 68657373 2:68657137:T:G -0.9797 7.455e-08
2 8444118 2:8154534:C:C -0.6569 7.704e-10
2 8444118 2:8406250:A:A -0.6554 1.661e-07
2 8444118 2:8442454:T:T -0.7902 6.87e-08
2 8444118 2:8442615:C:C -0.7491 4.723e-11
2 8444118 2:8442853:C:C -0.8246 1.232e-13
2 8444118 2:8442863:C:C -0.7569 7.234e-10
2 8444118 2:8442904:A:A -0.8411 7.622e-13
2 8444118 2:8443128:T:C 0.7368 3.866e-12
2 8444118 2:8443217:C:C -0.6718 1.018e-09
2 8444118 2:8443447:T:T -0.5949 1.555e-07
2 8444118 2:8443564:G:G -0.729 2.124e-11
2 8444118 2:8443672:G:C 0.7511 1.742e-12
2 8444118 2:8443722:G:A 0.7157 1.47e-11
2 8444118 2:8548478:G:T -1.142 2.606e-07
2 8444118 2:8549939:A:C -0.6989 1.246e-08
2 8444118 2:8602938:T:A -0.6732 6.359e-08
2 8444118 2:8734140:C:T -0.8468 3.537e-08
2 8444118 2:8742003:A:G -0.7374 7.177e-10
2 8444118 2:8744236:T:G -0.7846 1.991e-09
2 8444118 2:8744237:C:T -0.7787 1.841e-09
2 8444118 2:8749528:C:T -0.7758 6.702e-09
2 8444118 2:8749558:C:T -0.7253 1.964e-09
2 8444118 2:8749591:T:C -0.7338 2.105e-07
2 8444118 2:8749661:G:T -0.7134 5.571e-09
2 8444118 2:8749932:G:T -0.7097 6.73e-08
2 8444118 2:8750338:G:A -0.7295 5.746e-09
2 8444118 2:8750392:C:G -0.7286 1.18e-09
2 8444118 2:8750477:G:A -0.8679 4.76e-09
2 8444118 2:8750614:G:C -0.7196 2.053e-09
2 8444118 2:8750638:G:A -1.13 3.944e-08
2 8444118 2:8750733:A:G -0.7633 6.873e-08
3 102983738 3:102983725:C:C -0.3909 1.253e-07
3 102984695 3:102921373:C:T 0.3399 3.173e-09
3 102984695 3:102942819:G:A 0.5537 1.464e-07
3 102984695 3:102966519:G:G 0.3186 2.959e-09
3 102984695 3:102966548:A:A 0.2724 2.607e-07
3 102984695 3:102982676:A:A -0.3139 8.739e-10
3 102984695 3:102982704:G:G -0.2749 5.158e-08
3 102984695 3:102985335:G:T 0.3597 7.403e-10
3 102984695 3:102985482:A:G 0.3671 2.365e-09
3 102984695 3:102985671:C:T 0.3959 4.521e-10
3 102984695 3:103092301:T:C 0.323 5.812e-08
3 102984695 3:103094198:C:T 0.3918 1.51e-08
3 102984695 3:103094208:C:T 0.4096 2.835e-09
3 102984695 3:103094271:A:G 0.4032 8.279e-09
3 102984695 3:103094290:A:G 0.4009 1.168e-08
3 102984695 3:103094797:A:G 0.541 1.462e-07
3 102984695 3:103095307:C:T 0.3149 5.923e-08
3 102984695 3:103095824:A:G 0.5516 7.981e-08
3 102984695 3:103095992:T:A 0.5561 1.297e-07
3 102984695 3:103348483:T:C 0.543 1.05e-08
3 102984695 3:103349544:A:G 0.5375 8.095e-08
3 102984699 3:102795410:T:G 0.3739 1.743e-08
3 102984699 3:102797491:A:G 0.2471 1.147e-08
3 102984699 3:102921373:C:T 0.2427 8.61e-12
3 102984699 3:102934211:G:A 0.2258 4.291e-08
3 102984699 3:102942819:G:A 0.3998 9.528e-10
3 102984699 3:102966519:G:G 0.2452 9.552e-14
3 102984699 3:102966548:A:A 0.2245 4.151e-12
3 102984699 3:102985335:G:T 0.2491 6.611e-12
3 102984699 3:102985482:A:G 0.2523 4.205e-11
3 102984699 3:102985671:C:T 0.2684 1.107e-11
3 102984699 3:103092301:T:C 0.2243 1.429e-09
3 102984699 3:103094198:C:T 0.2463 1.426e-08
3 102984699 3:103094208:C:T 0.2568 2.969e-09
3 102984699 3:103094271:A:G 0.2509 1.147e-08
3 102984699 3:103094290:A:G 0.2414 4.945e-08
3 102984699 3:103094622:A:C 0.2823 4.303e-08
3 102984699 3:103094797:A:G 0.3942 6.429e-10
3 102984699 3:103095011:C:T 0.3779 6.729e-09
3 102984699 3:103095258:T:C 0.2823 4.303e-08
3 102984699 3:103095307:C:T 0.2144 3.253e-09
3 102984699 3:103095542:G:A 0.2643 1.207e-07
3 102984699 3:103095592:A:C 0.2643 1.207e-07
3 102984699 3:103095824:A:G 0.3901 1.007e-09
3 102984699 3:103095992:T:A 0.3874 3.496e-09
3 102984699 3:103096050:A:G 0.3824 5.733e-09
3 102984699 3:103096438:G:A 0.3779 6.729e-09
3 102984699 3:103229846:A:G 0.2155 7.305e-09
3 102984699 3:103348483:T:C 0.3284 3.841e-08
3 102984706 3:102849584:G:G -0.2644 2.311e-07
3 102984706 3:102982676:A:A -0.3271 5.452e-14
3 102984706 3:102982704:G:G -0.3616 3.411e-18
3 102984706 3:102982708:C:T 0.5517 2.694e-14
3 102984706 3:102983725:C:C -0.3149 7.153e-09
3 102984706 3:102984665:A:A -0.2929 3.239e-08
3 102984706 3:103094198:C:T 0.3238 7.999e-08
3 102984706 3:103094208:C:T 0.3196 1.211e-07
3 102984706 3:103094271:A:G 0.326 9.54e-08
3 102984706 3:103094290:A:G 0.3215 1.629e-07
3 102984708 3:102966519:G:G 0.1844 9.464e-09
3 102984713 3:102795296:C:T 0.2876 1.094e-09
3 102984713 3:102795343:A:G 0.2222 1.629e-07
3 102984715 3:102982676:A:A -0.2322 2.432e-07
3 102984715 3:102982704:G:G -0.2349 8.357e-08
3 102984715 3:102982708:C:T 0.4174 2.284e-08
3 102984724 3:102982676:A:A -0.4185 1.311e-10
3 102984724 3:102982704:G:G -0.3918 8.713e-10
3 102984724 3:102982708:C:T 0.6423 4.612e-09
3 102984760 3:102795343:A:G 0.363 1.199e-07
3 102984760 3:102795593:G:T 0.4185 2.279e-09
3 102984844 3:102982643:C:C -0.9938 1.034e-08
3 102984844 3:102982676:A:A -0.593 6.719e-08
3 102984844 3:102982704:G:G -0.6472 1.154e-09
3 102984844 3:102982708:C:T 1.216 1.384e-11
3 102984844 3:102983017:T:T -0.8762 3.583e-09
3 102984844 3:102983279:C:C -0.8089 7.246e-08
3 102984844 3:102983298:C:C -0.8694 6.254e-08
3 102985380 3:102795410:T:G 1.294 3.171e-10
3 102985380 3:102795562:T:A -0.5331 6.195e-08
3 102985380 3:102795567:G:T -0.5276 7.987e-08
3 102985380 3:102795593:G:T -0.6344 3.363e-10
3 102985380 3:102797491:A:G 1.247 3.429e-23
3 102985380 3:102808179:G:A 1.136 2.861e-10
3 102985380 3:102842258:C:T 1.24 1.734e-17
3 102985380 3:102842328:T:A 1.177 1.715e-18
3 102985380 3:102920135:C:T 1.997 8.868e-12
3 102985380 3:102921373:C:T 1.248 3.177e-37
3 102985380 3:102931322:T:C 0.9372 3.315e-09
3 102985380 3:102932489:C:T 0.874 1.549e-08
3 102985380 3:102934211:G:A 1.165 2.434e-22
3 102985380 3:102941657:G:A 2.418 2.916e-18
3 102985380 3:102942819:G:A 1.352 2.698e-11
3 102985380 3:102959205:C:T -0.7281 2.694e-12
3 102985380 3:102964344:C:G 1.708 4.545e-11
3 102985380 3:102966519:G:G 1.06 1.31e-28
3 102985380 3:102966548:A:A 0.8732 4.078e-19
3 102985380 3:102982574:C:C 0.8806 1.796e-18
3 102985380 3:102985335:G:T 1.35 3.08e-44
3 102985380 3:102985482:A:G 1.377 1.822e-40
3 102985380 3:102985671:C:T 1.345 4.164e-34
3 102985380 3:103078683:G:A 1.021 7.97e-20
3 102985380 3:103084552:A:C 2.334 1.046e-19
3 102985380 3:103084559:C:G 1.898 5.012e-19
3 102985380 3:103088564:T:C 2.253 2.611e-16
3 102985380 3:103089011:A:C 0.9975 3.689e-17
3 102985380 3:103089443:C:A 1.042 1.288e-19
3 102985380 3:103092301:T:C 1.175 4.951e-29
3 102985380 3:103094198:C:T 1.323 1.29e-26
3 102985380 3:103094208:C:T 1.273 3.491e-24
3 102985380 3:103094220:C:T 1.267 5.096e-08
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